Sentence examples for update databank from inspiring English sources

For A. thaliana, a similar set of reference TEs is present in the Repbase Update databank.

For A. thaliana, it was possible to construct 305 "knowledge-based" consensuses for the 318 TE reference sequences in the Repbase Update databank: 154 corresponded to the entire element and the others were truncated.

For benchmarking purposes, when analyzing de novo consensus sequences from the D. melanogaster and A. thaliana genomes, we removed the sequences known to belong to these species from the Repbase Update databank, to establish conditions equivalent to those for the analysis of a new genome.

However, unlike tools like TEclass [54], which makes use of the profiles of frequent k-mers from the Repbase Update databank, our TE classifier guides output classification by detailing the precise TE features present on the analyzed sequences, such as terminal repeats and matches with known TEs.

We then compared each annotation with that obtained with the reference TE libraries from the BDGP and Repbase Update databanks (Table 3).

One way of assessing the quality of the de novo consensus sequences obtained with our three-step approach would be to compare these sequences with reference sequences from the Berkeley Drosophila Genome Project (BDGP) or Repbase Update databanks.

Indeed, we found de novo consensus sequences that were classified as "complete" TE but had no single match in blastn with known TE reference sequences from the BDGP or Repbase Update databanks.

Moreover, each high-level category of the TE classification (e.g. "class I LTR-retrotransposon", "class I LINE", and "class II DNA transposon") contained similar proportions of de novo consensus sequences and TE reference sequences from the BDGP or Repbase Update databanks.

In particular, there is a need for information and telecommunications systems in order to gather, elaborate and update the databanks and hypertexts, and for the related communications system.

He mined the daily box scores for clues about each pitcher to update his mental databank.

Different lines of alcohol dehydrogenases (ADHs) have separate superfamily origins, already recognized but now extended and re-evaluated by re-screening of the latest databank update.