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Investigators were requested to provide all GWA data that they had obtained for evaluation of any cancer phenotype, including any additional unpublished datasets.
Nine unpublished datasets were also solicited and included in the analysis (see Supplemental Table 3).
Unpublished datasets were evaluated by an internal peer-review process before inclusion.
This classifier was validated in silico on three independent and unpublished datasets.
Finally, the relationship between the genotype and CRC was analysed by meta-analysis, combining the effect estimates of all published and unpublished datasets.
We sought unpublished datasets by contacting authors known globally for their large community-based study sites, but held them to the same inclusion/exclusion standards.
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Writing in the Environmental Science and Technology journal, Singla and colleagues described how they analysed 26 peer-reviewed papers, as well as one unpublished dataset, from 1999 onwards to examine the chemical make-up of indoor dust.
The document count is one fewer than appears in the ChEMBL 13 release notes [23], as the result does not include the doc_id -1, as this refers to the unpublished dataset, which is not a valid bibo Article.
The reps dataset is an unpublished dataset that contains seven 10-fold dilutions of an S27a housekeeping gene target, with four replicates each.
All predicted transcription factor binding sites taken from the UCSC genome browser (TFBS track representing Transfac data) were searched in a genomic area of 2000 nucleotides (nts) upstream and 2000 nts downstream to the TSS, to yield a dataset of all miRNAs and the TFs capable of binding to their promoters (unpublished dataset).
The two unpublished dataset were from the Akershus University Hospital (AHUS).
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