Since MSLL clones resulted from a complete digestion, they should uniquely cover their genomic region of origin.
This extension is an essential strength of CellNOptR since the toolkit presented here uniquely covers a wide variety of different logic modeling methods adapted to different experimental scenarios and modeling goals, all available within the same training framework.
The uniquely mapped reads covered approximately 94% of the Nipponbare genome in all five accessions (Table 1).
The uniquely mapped reads covered 13,963 out of 16,229 annotated genes in the sheep genome, with an average read depth of 16X.
For non-immunoprecipitated control samples, uniquely mapping reads covered ~80% of the genome and k-mer redistributed repeats covered 23% of the genome; these percentages included overlaps at the ends of reads between the two types.
The uniquely mapped reads covered over 80 million bases of the total genomic bases, with an average read-depth of 26 75 per base across different samples (in Additional file 2: Table S2).
For each sample, high-quality uniquely mapped reads covered ∼116 million of the ∼120 million base pairs of the Col-0 TAIreferencence genome (see Experimental Procedures), and most uncovered regions were located either in centromeres or telomeres.
It has been drafted in this way to cover any technique that may be developed to uniquely track consumers, not just cookies, although it does not cover the browser fingerprinting technique which does not need to store information in browsers.
Read coverage is the ratio of pseudogene exon length covered by uniquely mapped reads to the total pseudogene exon length.
The uniquely mapped reads (8,508,418-10,219,332) covered 78.0% (21,414/27,444) of the annotated transcripts in UCSC pig genome database [ 24] by at least one sequence read.
