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Counts for the unique mapping and multi-mapping reads were then added to compute the repeat element sub-family enrichment.
For the differentiating data, the unique mapping efficiency was improved by 10.59% (p-value = 0, variance ≈ 10−8).
Only reads with one unique mapping were allowed.
Gray lines indicate collinearity between the two genomes; each line represents a unique mapping alignment >5 kb in length.
The mapping-quality was set to 10 to filter the mapping results to obtain unique mapping reads.
The study adopts a unique mapping methodology utilizing GIS technologies, behavioral mapping and videography.
Furthermore, expressing energy in terms of frequency generates a unique mapping between a mass and an associated frequency.
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Allowing non-unique mapping of reads allows identification of potential mutations within duplicated regions.
The 481 published elements resulted in 484 positions due to non-unique mapping.
Resulting reads that are shorter than a specified length are discarded to reduce non-unique mapping.
A two-round-unique mapping strategy with Bowtie [ 23], SOAP [ 8], or BWA [ 9] was applied to retrieve an increased number of mismatch calling.
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