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Other distance methods (including the one used to construct the tree in the figure of the 20-organism phylogeny) relax the condition of uniform rate and allow for unequal rates of evolution along the branches.
Finally, we also assume phylogenies are free from systematic errors and the confounding effects of mutational saturation, long branch attraction, and unequal rates of evolution along branches of the tree.
Note that our statistical method was designed for unequal rates of evolution as well as a molecular clock, although we illustrate only the latter case here for simplicity.
This will cause Long Branch Attraction (LBA) effects during tree construction, either due to unequal rates of evolution or annotation errors.
Thus, the theory can account for differences in both substitution rates and evolution times across lineages, and it can be applied to phylogenies in which unequal branch lengths occur due to unequal rates of evolution, asymmetrical topologies, or both.
We apply the generalized signal and noise analysis to classic quartet phylogenies in which long-branch effects can arise due to unequal rates of evolution or an asymmetrical topology.
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The major consequence of unequal rates of chromosome evolution is a disproportionally large role of genetic content of certain chromosomal arms in adaptation and, possibly, speciation.
Based on branch length, all of homeologs from the two tetraploid species had unequal rates of sequence evolution following allopolyploid formation.
Phylogenetic analyses, such as that depicted in Figure 5, may be misleading with respect to the relative placement of subfamilies due to unequal rates of sequence evolution and poor taxonomic sampling.
This unequal rate of development of adipose layers is in agreement with that shown previously [ 16].
Though fast, such approaches are not ideal because the most similar sequence may not in fact be the most closely related sequence due to the vagaries of evolution such as unequal rates of change in different lineages or convergent evolution [31] [35].
More suggestions(15)
unequal rates of cell
unequal numbers of evolution
unequal rates of degradation
unequal rates of extinction
unequal rates of chromosome
unequal rates of transfer
unequal rates of persistence
unequal rates of recurrence
unequal rates of speciation
unequal rates of exchange
unequal rates of sequence
unequal rates of diffusion
unequal frequencies of evolution
unequal rates of development
unequal rates of substitution
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