Sentence examples for underlying gene expression data from inspiring English sources
Although the underlying gene expression data are almost always deposited in one of the major public databases (Gene Expression Omnibus (GEO) or ArrayExpress) [ 24, 25], there is no such convention for the genotypes or the eQTL results.
GDP utilizes a web-based user interface to access the underlying gene expression profiling data, which is organized on a MySQL database server.
Applying the aforementioned methodology without the time-scaling option to RNA-seq data, we estimated the smooth representations of the underlying gene expression in Th0 and Th17 lineages.
Recently, integration of genome-wide array-based comparative genomic hybridization (aCGH) and gene expression microarray data has provided a new insight about the molecular mechanisms underlying gene expression alterations [ 7- 10].
The approach utilizes the underlying structure of gene expression data to extract patterns and identify coexpressed genes that are responsive to experimental conditions.
The correlation network based statistics implemented in the modulePreservation function do not require the module assignment in the test network but require the user to input gene expression data underlying a reference data set and a test data set.
NCA uses gene expression data and underlying network connectivity during its analysis; consequently, the quantitative measures provided by NCA are dependent on the accuracy of the underlying network.
Our study is the first application of NCA to a plant TF-GRN and demonstrates the power of NCA for determining nontrivial information about a network based solely on gene expression data and underlying network connectivity.
The gene expression data that underlie these networks greatly facilitates the biological interpretation of the complex datasets in the search for explanations of the observations.
Indeed, the system identification problem of the underlying dynamic gene networks falls naturally into the category of reverse engineering [ 12]; a complex genetic network underlies a mass set of gene expression data, and the task is to infer the connectivity of gene circuit through dynamic gene regulatory model [ 11].
REACTIN provides a useful tool to investigate regulatory programs underlying a disease, and more generally underlying any biological processes, providing the related case and control gene expression data.
