Sentence examples for under the duplication model from inspiring English sources

Furthermore, the parameters inferred under the duplication model were used to calculate the posterior probability that a duplication occurred on each branch of the tree.

We also ran 1,000 simulations on Tree-10 under the duplication model using the maximum likelihood parameter values for a process conditioned on 15 ancestral mollusc chromosomes.

We also calculated the maximum likelihood for all simulated data sets under the duplication model and used that value to calculate a log likelihood ratio.

Our estimates of the WGD rate under the duplication model ranged from 0.109 duplications/billion years for Tree-10 to 0.123 duplications/billion years for Tree-10.

Maximum likelihood estimates for the total rate of change for the birth death process were much smaller under the duplication model than under the other two models because under the duplication model a great deal of the change in chromosome numbers can be accounted for by WGDs.

To do this, we simulated 1,000 data sets on Tree-10 using the maximum likelihood values for the root count, λ and μ calculated under the duplication model.

In order to make this comparison, we simulated 1,000 data sets on Tree-10 under the static and the duplication model using maximum likelihood parameter values.

Although 40% of stationary E. coli are reported to carry two chromosomes 57, and only ∼10−3 of Salmonella to carry a spontaneous duplication 9, the source of the repair partner in starving haploid bacteria has not been determined, and the duplication model might predominate under the specific starvation conditions that promote DSB-dependent stress-induced mutation, particularly in the chromosome.

The concept of reconciling a gene tree to a species tree under the duplication-loss model was pioneered by Goodman [ 4] and then widely accepted, utilized and also generalized to models of other processes such as horizontal gene transfer [ 5- 7].

NOTUNG and TreeFix are two of the best performing methods for species tree aware gene tree inference under the duplication-loss model (Wu et al., 2013).

Similar ideas have been successfully used before in the context of gene tree error correction under the duplication-loss model (Wu et al., 2013).