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The fact that all three comparisons involve An. arabiensis, suggests this lineage underwent more non-synonymous substitutions than expected under a neutral model.
While there is no evidence, to date, of greater sequence variation in the COMT locus than that expected under a neutral model [54], the distribution of minor SNPs exclusively within haplotypes associated with reduced COMT activity requires further study.
Under a neutral model, we would expect similar haplotype lengths across all frequency classes.
Gene trees were simulated under a neutral model using Hudson's program ms (Hudson, 2002).
This process can elevate levels of LD around the target locus relative to that expected under a neutral model.
We also observed overall patterns of endogenous retroviral abundance that, under a neutral model, are not universally male biased.
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We compared ω by maximum likelihood under two different models: a neutral model where ω was fixed = 1, and a model where ω was free to vary.
Finally, another possible concern regarding EST-SSRs is that these often non-neutral loci might bias the estimates of population divergence under the assumption of a neutral model of drift, mutation and migration [ 21].
Only piwi in D. simulans fits a neutral model under all three demographic scenarios.
Experimental observations were used as parameters of approximate segment size for simulation of a neutral model under the coalescent.
Analysis of the latter pattern reveals that coregulation between large regulon-size TFs is common under a network neutral model, leading to the assembly of a great number of FFLs and bifans.
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