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Such departure can be either the result of chance or indicative that the gene is under a lineage- and gene-specific pressure that increases its rate.
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LineageSpecificSeqgen allows simulation of DNA and amino acid sequence alignments under a lineage-specific evolutionary process.
The isolate is proposed under a new lineage (designated as lineage IIa).
Under a general lineage or unified species concept, the only criterion used is that lineages have to evolve separately from other lineages to be considered species [ 7].
Both warm temperatures and wet climate may have been necessary for the rise of the diversity under a successive lineage replacement scenario.
We compared two species living under different thermal conditions within a lineage of Pyrenean beetles highly modified for the subterranean life since the Miocene.
A lineage that formed under the genius of Maruyama Ōkyo might be summarily described as lyrical realism.
Under this model, substitution rates are allowed to vary within a lineage and across lineages within the dataset under the constraints of a prior distribution.
But many of these may have gone through independent losses inside a lineage, therefore would not fall under our criteria for determination of lineage-specific CNSs.
The Galadriel lineage seems to be an under-represented lineage among monocots, since there are only reports of Galadriel elements in banana [ 21].
This region appears to be under constraint in a lineage-specific manner, and does not appear as a strong signal when looking for conservation across all strains.
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