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By employing these, we were able to analyse the spatial composition of the benchmark datasets in more detail and derive several rules of thumb for choosing unbiased datasets for evaluating ligand based VS methods.
Hence, the approximation approach is likely to yield even better results with larger and unbiased datasets.
To best avoid this problem, it would be ideal to use strictly unbiased datasets for analysis.
Presently, we have to resort to the best available unbiased datasets generated by high-throughput screens.
To assess liver cell phenotype, previous unbiased datasets were mostly of transcripts until the Human Liver Proteome Project HLPPP) reported on 6,788 proteins from adult liver and 2,485 proteins from fetal liver.
However, such fully unbiased datasets are not available (yet) as this would require nothing less than an identification of all true and relevant protein-protein interactions occurring inside cells.
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The combined score calculations were checked and verified by each investigator independently, providing the most unbiased dataset possible.
The DUD dataset is a well-defined and unbiased dataset of annotated active compounds and decoys for the validation of virtual screening.
A combination of both protein and peptide separation methods before application to LC-MS/MS has proven to be the most efficient method to obtain a large and unbiased dataset.
We created an unbiased dataset by filtering for non-overlapping Drosophila melanogaster genes and introduced exactly five SNPs into each of the genes.
We sought to generate comprehensive SB insertion site profiles from tissues in vivo in the absence of selective pressure in order to produce an unbiased dataset more closely matched to those obtained from SB-induced tumors.
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