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The nodes in these prefix trees can be labeled by any arbitrary atom typing scheme.
E. coli O157 phage typing scheme.
MLST data were generated by using the international K. pneumoniae MLST typing scheme (8, 12 ).
†Assigned to each isolate according the recommended multilocus sequence typing scheme for C. dubliniensis (scheme D) (7 ).
The 24 loci internationally-agreed MIRU-VNTR typing scheme allowed to distinguish 13 clusters totaling 28 isolates (Table 2).
Plasmids were classified according to their incompatibility group by using a PCR-based replicon typing scheme [ 11].
The Vi phage typing scheme from the Colindale Institute London was used for Salmonella spp. typing (6 ).
In the phage typing scheme there are 14 T4-like bacteriophages (TP1-8 and TP11-16) and two T7-like bacteriophages (TP9 and TP10).
This observation of a phylogenetic distinction between SBE and faecal isolates has been previously described using an alternative multi-locus virulence typing scheme [ 16].
MIRU-VNTR typing (also called Multi-Locus VNTR analysis or MLVA) was done as described previously using the standardized 24-loci VNTR typing scheme [ 30].
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Plasmids were classified according to their incompatibility group by a PCR-based replicon-typing scheme (29 ).
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