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The masked sequences were identified and classified into different types of repeats in each of the species.
Generally, di- and trinucleotide repeats overstepped other types of repeats in all the species and mostly contributed to the major fraction of SSRs (Wei et al. [2014]).
Different types of repeats and their associated chromatin modifications and chromatin-based events could be involved in a variety of meiotic interactions between the X and Y chromosomes.
Both types of repeats contain hydrophobic residues at positions a and d of the heptads and polar residues in the remaining positions.
Euchromatic and heterochromatic histone modifications mutually reside in other types of repeats such as HOR alpha satellite DNA and centromeric regions in plants and at genes that play key roles in development [8], [9], [28], [33].
The results are presented in Figure 3 and demonstrate that all of the studied invertebrates have no or negligible amounts of short or long interspersed repetitive elements, while mammals and non-mammalian vertebrates have the highest representation of these types of repeats.
A total of 175 different types of repeats were identified.
Other types of repeats continue also to be discovered.
In terms of completeness of types of repeats, SWA achieved the best results.
In terms of the completeness of types of repeats, SWA achieved the best assembly.
Consequently, the presence of particular types of repeats is likely to contribute to IDR functioning.
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