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Order parameters were calculated (Fig. 7E) and multi-comparison testing indicated that 1) there were significant differences (p<0.05) in order parameter for each frequency for both cell types (alignment at 1Hz>0.1Hz>0.01Hz); and 2) stress fiber alignment was significantly higher in FAK-null MEFs at the sub-threshold frequency of 0.1 Hz, although the difference was not remarkable.
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961 intersection accidents were collected from ten roads of Sichuan, Yunnan and Chongqing between 2007 and 2010.First, the paper analyzed intersection types, alignments, control types, crash types, and crash contributing factors.
Existing methods for measuring similarity/dissimilarity between DNA sequences roughly fall into two types: alignment-based methods and alignment-free methods.
For the unleveled-type alignment scenario, these differences were up to 65 g (range 111 to 175 g).
For the leveled-type alignment scenario, the differences between wires were up to 70 g (range 110 to 179 g).
Table 2 Brief comparison of different SiNWs alignment methods Alignment type Alignment method Inter-NW distance, alignment yield and control of NW density Merits Demerits References Langmuir Blodgett alignment Parallel alignment of SiNWs during uniaxial compression of Langmuir Blodgett trough 8 10 NW/mm; alignment yield is about 80 90 %.
The principal difference is the scarcity of β-type alignment pairs at higher sequence identities.
We call the former type alignment guided methods and the latter de novo methods.
PyNAST uses UCLUST (Edgar, 2010) instead of BLAST, whereas mothur relies on its own implementations of a k-mer search to select the reference sequence and a Needleman Wunsch type alignment algorithm to perform the pairwise alignment.
A third approach, provided by the QPALMA program (Bona et al., 2008), can align individual reads across exon exon junctions using Smith Waterman-type alignmentSmith Waterman-typey tralignmentsce site model.
Inference tools to reconstruct genome evolution based on glocal-type alignments have begun to appear [72], and some have even begun to incorporate nucleotide-level evolutionary models [73].
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