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Despite of the best value for k, we select k = 4 as the second best value for k because generation of three classes for evolutionary test is not possible with only two clusters of data.
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The two clusters of genes in our data show precisely opposite patterns while cluster 1 has decreased expression in acclimated samples, cluster 2 has increased expression suggesting the regulatory control mechanism may be the same while the direction of expression change is opposite.
The million base window allowed larger gene clusters to be identified in the experimental data (two clusters of seven genes and a single cluster containing eight genes).
When these sRNAs were mapped onto the melon chloroplast genome (unpublished data), two clusters of sequences resolved in regions presumably annotated as chloroplast rRNA.
Taken together, these results suggest that there are two clusters of conservation level in the data set - on the one hand glycolysis, metabolite transport, TCA cycle and pyruvate/NADH shuttles and on the other hand the respiratory chain and the glutathione pathway.
A hierarchical clustering of the microarray data identified two clusters of samples, shown in Figure 1 and in dendrogram form in Figure 2, a PC group and a healthy control group.
Principal Component Analysis (PCA) on microarray data identified two clusters of samples.
We investigate the dark matter distributions in the central region of two clusters of galaxies (A1835 and MKW3S) using Chandra data.
Hierarchical clustering of the log-ratio data showed that two clusters of genes differed in expression with respect to each other and with respect to HPI vs. LPI (Additional File 1, Figure. S1).
Two clusters of haplotypes were detected in the mtDNA data (d = 0.008), corresponding to the Pacific and Indian Oceans, with a low level of introgression observed outside a mixing zone at the Pacific-Indian boundary.
These simulations produced largely two distinct clusters of data points, representing naïve B cell (low Blimp-1 and high Pax5) and plasma cell (high Blimp-1 and low Pax5) populations, respectively.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com