Sentence examples for trimming based on the from inspiring English sources

Overall, 88,449 ATIV and 82,539 TIV were administered for a total of 170,988 person-seasons; after the data trimming based on the person-season distribution, we included a total of 164,254 person-seasons in the primary analysis.

To maximize the usage of available sequence data and effectively separate sequence reads originating from duplicated genomic regions, we performed read trimming based on the base quality rather than using the fixed read length (64 bp) previously applied for analyzing GBS data in wheat and barley (Poland et al. 2012).

Prior to de novo assembly, all obtained 40-mer reads were trimmed based on the phred quality value obtained using the Euler-SR qualitytrimmer command [26].

The candidate miRNA list was further trimmed based on the criteria as described [ 17, 42].

First Illumina raw reads filtered using CASAVA version 1.8.2 and subsequently trimmed based on the Phred quality scores using the CLC Genomics workbench 1.8.3.

Exons containing both sides of a junction alignment are separated and trimmed based on the boundaries of the junction to ensure accurate exon intron boundaries (Supplementary Fig. S3).

For each data set, all read-pairs were subject to quality control and reads were quality trimmed based on the presence of ambiguous nucleotides using the default parameters (Additional file 1).

Sequences were binned and trimmed based on the sample-specific barcodes using a custom perl script and Mothur with the following criteria: (i) sequence length > 199nt, (ii) sequence length <450nt, (iii) no ambiguous base in the sequences, and (iv) a maximum of 8 homopolymers.

Quality trimming of the Illumina data was performed with the windowed adaptive trimming tool Sickle (https://github.com/najoshi/sickle), using q = 30 as the threshold for trimming based on average quality in the sliding window and l = 50 as the threshold to keep a read based on length after trimming.

Another 67 positions were excluded by applying the 'strict' option (trimming based on an automatically selected sequence similarity threshold [ 59]).

Iteration starts with subjecting the "units" to automatic plausibility checks and statistical trimming based on current values of cost per inlier equivalent.