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Hence, it is probable that the trimming accuracy of cross_match could be improved by properly adjusting the parameter settings.
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We illustrate the impact of compositional heterogeneity and stationary-based character trimming on the accuracy of phylogenetic tree inference with a simple computer simulation.
We observed an overall improvement of the phylogenetic accuracy after trimming.
Post sequencing processing was performed on 14,028,815 reads to clip, trim and verify accuracy of size selection for all three major size classes [ 23]).
Processes that can be used for fine trimming, in order of increasing accuracy, are sandblasting, drilling, and laser ablation.
Accuracy with the trimming may require multiple tries to get desired shape.
Laser trimming is capable of achieving an accuracy of ±40 ppm.
Results indicate that although misspecified logistic regression propensity score models yield increased bias and standard errors, weight trimming following logistic regression can improve the accuracy and precision of final parameter estimates.
In this case, the quality increase due to trimming is low and does not affect assembly accuracy, while the number of broken pairs is increased, which may compromise assembly accuracy.
We further examined whether the same sequence accuracy improvement could be achieved by sequence trimming, which is one of the most commonly used strategies for eliminating low quality bases.
It is therefore generally assumed that trimming the alignment, so that poorly aligned regions are eliminated, increases the accuracy of the resulting MSA-based applications (Talavera and Castresana, 2007).
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