Sentence examples for trees mode from inspiring English sources

To do so, the log-likelihoods of site-patterns of the best ML unconstrained trees were estimated using Tree-Puzzle [ 95] under the 'user defined trees' mode, assuming GTR+G model for nuclear DNA phylogeny and HKY+G+I model for mtDNA phylogeny.

After the runs converged toward the same values, we loaded the saved genealogies from multiple runs into "L-Mode" (Load Trees Mode) in order to calculate values for model parameters for each pair of populations pooled across these multiple independent runs.

In this ML analysis, we performed an exhaustive search of the ML tree in the 'user defined trees' mode of Tree-Puzzle with all 945 possible topologies consisting of seven OTUs, namely, gnathostome Bmp2, gnathostome Bmp4, teleost bmp16, P. marinus PmBmp2/4-A, P. marinus PmBmp2/4-B, P. marinus PmBmp2/4-C and outgroup.

She has since been in what Let's Go editors call "dead tree mode," taking down information about guest houses, restaurants, national parks and bus schedules, in an old-fashioned spiral notebook.

To reduce the computational complexity of TU size selection, a fast algorithm for residual quad-tree mode decision was proposed in [7].

One may also expect that, because of hydraulic failure, standing death is more frequent during the driest years but, when plotting the tree mode of death registered at Paracou for each dead tree against the drought estimator, no evidence was observed for a potential trend (Aubry-Kientz et al. 2015).

The Markov Chain for the tree topology is shown in Figure 9, in which the number of neighbors for a tree mode in category a is x, x + 2 for category b, 2 for category c, 3 for category d, and x + 3 for category e.

The analysis was performed using Tree-Puzzle 5.2 [ 44] under the JTT+I+Γ4 model by inputting all possible tree topologies for relevant taxa in the 'user-defined tree' mode.

Exhaustive ML analysis with constraints of relationships inside particular taxa was performed using TreePuzzle 5.2 [ 25], by inputting all possible tree topologies in a 'user defined tree' mode.

In ProFITS, the TFs are all displayed in flat HTML tables, PKs/PPs and UPS-related genes are represented in a hierarchical tree mode.

Maximum-likelihood analysis was performed with TreePuzzle 5.2 [ 25] by inputting all possible tree topologies consisting of six OTUs (gnathostome Emx1-3, lamprEmxAmxA, lamprey EmxB and outgroup) in 'user defined tree' mode.