Sentence examples for trees for domain from inspiring English sources

The outputs of this step are a collection of phylogenetic trees for domain compositions.

We used each one of the four SMARCAL1 conserved domains to build separate multiple sequence alignments and construct separate phylogenetic trees for each domain.

The gene trees, including the divided trees for large domain families, were reconciled with an existing species tree (Moreau et al. 2012) using NOTUNG (Chen et al. 2000).

Phylogenetic trees for individual domains was performed on the subset of sequences used in Figure 3.

Orthologs of TFs were identified by a procedure based on the analysis of phylogenetic trees for protein domains in MicrobesOnline [ 54] and validated by bidirectional genome-wide similarity searches with 30% of identity threshold using the Smith-Waterman algorithm implemented in the Genome Explorer program [ 58].

We would like to consider additional heuristics for finding reasonable spanning trees, particularly for domains other than the Web.

Figure  6 shows phylogenetic tree for MPP domain superfamily proteins studied here.

Similarly to the original ML tree, the ML tree for each domain supports claims for branching order mainly for recent taxonomic affiliations.

We tested how different the results would be upon application of phylogenetic relationships from previously published phylogenetic trees for the MADS domain proteins AP1 and FUL [ 79].

Similar approaches were taken to generate phylogenetic trees for PYHIN pyrin domains, rooted with marsupial sequences.

MF identified and characterised LNX orthologs and generated alignments and phylogenetic trees for individual PDZ domains.