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The unrooted tree was plotted and edited using the software Treedyn [47].
The tree was plotted and edited using Figtree version 1.3.1 (http://tree.bio.ed.ac.uk/software/figtree/).ac.uk/software/figtree/
Phylogenetic tree was plotted using neighbor-joining method implemented in MEGA version 4.0 [17] with 1000 bootstrap replicates, and bootscanning was performed in SimPlot version 3.5 [18] to confirm the recombination structure.
The level of statistical support, which was expressed as the mean value of robustness proportion for internal nodes observed in the template tree, was plotted as a function of the factors to be simulated (Figure 3).
The tree was plotted with TreeDyn (v198.3).
The constructed phylogenetic tree was plotted using MEGA5.
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Here in this study the cluster tree is plotted and number of clusters for each well was identified based on hydraulic flow units using Minitab ®.
The cumulative frequency distribution (CFD) of the branching times (after normalization) along this tree is plotted.
The branch lengths for each tree were plotted against each other.
In Figure 7, the species tree is plotted to the left of the predictions and its nodes are colored the same way as the predictions are.
The Log likelihood scores of each sampled tree were plotted against generations in order to assess the number of generations needed to reach stationarity and to evaluate the appropriate burnin (50,000 generations; see Results).
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