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The consensus trees were then visualized using the Tree Graph 2 software application [ 40] and manually rooted.
The Tree Graph 2 software application [ 40] was then used to visualize the consensus trees and manually root them.
"Flowchart," a diptych, records in a tree graph and pie charts her zany interior life over a month earlier this year.
The articulated system is represented as a rooted tree graph.
The chapter focuses on hierarchy, which is a specialized type of tree graph.
Let T= V,E) be a tree graph with non-negative costs defined on the vertices.
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We show that finding the optimal strategy is FNP-hard even in tree graphs and APX-hard in arbitrary graphs.
Our structure prediction protocol RAGTOP (RNA-As-Graphs Topology Prediction) represents RNA structures as tree graphs and samples graph topologies to produce candidate graphs.
Fig. 1 A hypothesis of relationships among gorillas, chimpanzees, and humans shown as two different, but complementary, tree graphs.
Here, we focus on the tree graphs and evaluate the newly founded RNAs since 2011, which also support our refined predictions of RNA-like motifs.
We expand the RAG resource for large tree graphs up to 13 vertices (~ 260 nucleotides), thereby cataloging more than 10 times as many secondary structures.
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