Sentence examples for treat sequence from inspiring English sources

We treat sequence profiles and 3-class secondary structure as the basis features and then evaluate the value added by the 8-class secondary structure and 3-class solvent accessibility.

However, most of them treat sequences evenly or consider only two sequences.

For example, we can treat sequences from the HapMap Project as an initial set and apply the greedy algorithm to the study sample as an extension in a similar manner as in analyses treating other inclusion criteria.

Among the approaches employed to measure the relative importance of sequence neighbors on molecular evolution have been continuous-time Markov process models for substitutions that treat sequences as a series of independent tuples.

Sequence based approaches, such as presented here, can treat sequences as separate entities and thus tease apart deeper and more recent divergences in the evolutionary history of this important group.

Although all these three assemblers use the same de Bruijn graph algorithm, they are different in how to treat sequencing errors, resolve ambiguities and utilize read pair information [ 17].

A number of approaches have been developed which can be broadly classified according to whether they treat sequences as a series of independent tuples [ 12- 14] or not [ 15- 17].

We propose a method which treats sequence, structure and even combined sequence + structure in a single framework.

Unlike previous bisulfite sequencing methods that destroy knowledge of the original (non-bisulfite treated) sequence, the hairpin technology (see Figure 1) allows for the recovery of the original sequences by putting a connector between the Watson and Crick strands and then using PCR and paired end technology to sequence short reads [ 16].

However, owing to unspecific cross-hybridization mostly caused by low sequence complexity of sodium bisulfite treated sequences, not all probe sequences were suitable for further analysis.

We then used EstimateS [42] to compute a sample-based analytical rarefaction curve, including confidence intervals based on 1000 replications, treating sequences as samples and sequence types as equivalents of species.