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An exception is the Tra/Type IV transport cluster VIMSS582581-5826011 and VIMSS582864-582884) noted previously.
Enrichment of each MCL cluster for GO Biological Process BPP) terms (see Methods) identified processes such as 'tRNA aminoacylation for protein transport' (Cluster 1), 'Cell division' (Cluster 2), and 'Protein transport' (Cluster 6).
As shown in Table 2, the phylogenetic profile of these 14 NHLPs identified a three-gene ABC transport cluster as the only high-scoring protein family other than the NHLP precursor gene itself.
Other clusters suggested that coselection may impact phosphoprotein-based intracellular signaling cascades (cluster 3) and acetylation-mediated protein transport (cluster 4; supplementary figs. S15 and S16, Supplementary Material online).
The two cobalamin biosynthesis clusters on pSZ77 situated on either side of the TonB-encoding transport cluster may thus provide strains SZ and KB-1 with a mechanism for simultaneous regulation of both cobalamin biosynthesis and scavenging for extracellular corrinoids.
In our study, despite the presence of MET boxes preceding three genes potentially related to methionine transport and metabolism (metQ1, metQ2, and metE), only expression of the metQ1NP transport cluster was affected by the mtaR mutation.
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Table 3 Genes enriched in nitrogen compound response and transport clusters regulated by NLP7.
Therefore, the mobile transport clusters of VER2-GFP do not denote the transport of VER2 itself as a vacuolar storage component.
Here we apply IVC to the directed evolution of [FeFe] hydrogenase I (referred to as CpI) from C. pasteurianum, a complex metalloenzyme containing multiple iron-sulfur electron transport clusters and an H-cluster catalytic prosthetic group composed of [4Fe-4S] and [2Fe-2S] clusters augmented by cyanide, carbon monoxide, and dithiolate ligands [26], [27].
Conversely, about 24% of RTCs were in the Transport clusters in the adult phase and only 8.5% in the embryo phase (Fig. 4E).
For the pathogens, it is mainly F. graminearum, M. fijiensis and M. graminicola that show several families with lineage-specific larger sizes in remarkably similar functions (distinct families, but all related to transmembrane transport (clusters I-III, Figure 2B)).
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