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To mitigate the detrimental effects of sporadic artifacts (e.g., swallowing) on motion parameter estimation, translation estimates were filtered with a 5-point median filter and then re-applied (using 3dAllineate in AFNI [ Cox, 1996 ]) to the original data before motion correction.
For translation estimates, we observed no main effect of condition (F 1, 23) = 1.43, p = 0.23) or translation estimate by condition interaction (F 1, 23) = 0.30, p = 0.74).
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This causes a decrease in the translation estimate and in an aftereffect at the end of the translational acceleration.
It returns the resulting translation estimate in the last column of M. Randomly select a valid matching pair and compute the translation between the two feature locations.
This significantly affects the performance of the joint scale space filter by introducing a bias in the translation estimate.
But most of these works are restricted to translation estimate, and this implies poor performance when encounter with significant variations in the target scale.
The percentage of ribosomes engaged in translation, estimated by area integration of the absorbance of the polysomal profile as described previously [ 18], was also not significantly affected by isoleucine starvation: the mean values were 59±3%3% in conditions of isoleucine starvation and 61 ± 2% in optimal growth conditions [ 18].
This translation produces estimates of plant foraging parameters for the Holling disc equation that are in the correct units and maintain the correct theoretical interpretation for plant foraging (Table 1).
An increase of eIF2B levels to 1.6 μM would be required to achieve guanidine exchange rates at the upper limit of the 90% confidence interval for translation rate estimates produced here, and it can be concluded that the available kinetic knowledge on eIF2 nucleotide exchange matches translation rates predicted from the genome-wide datasets very closely.
We started our analysis by comparing the typical decoding times estimated from the ribosome profiling data to other estimations of codon translation efficiency estimated using additional methods which are based on codon distributions.
DOI: http://dx.doi.org/10.7554/eLife.01179.007 Translational control is measured by a gene's translation efficiency, estimated as the ratio of ribosome footprint density (from ribosome profiling) to mRNA abundance (from mRNA-seq) for each gene.
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