We have presented examples of permanent and transient modules, after analyzing protein complexes and how the retrieved modules could map to them.
From the combination of protein interactions with gene expressions, a confidence scoring scheme has been proposed before proceeding via GO with further classification in permanent and transient modules.
Regarding the methods, CFinder is more redundant than MCODE (it maps three RNA polymerase, three Proteasome, and two Transcrption factors), but they include permanent and transient modules.
Last, as we have implemented an approach for combining protein interactions with gene expressions, we have found modules which are more consistent than those obtained by using only the topology of the network itself, and then refined their validation with reference to permanent versus transient modules, together with other proposals (e.g. overlap scores, pathway enrichment).
A new transient recorder module architecture was developed to fulfil many of today's requirements of data acquisition for plasma diagnostics on fusion experiments.
This paper describes the design and implementation of a transient recorder module in compliance with this new architecture, which, along with the developed software, can be efficiently used either as a stand-alone or integrated in a multi-unit data acquisition system.
The system is based on the Advanced Telecommunications Computing Architecture™ (ATCA™) and includes a transient record (TR) module with 8 channels of 14 bits resolution at 400 MSamples/s (MSPS) sampling rate, 4 GB of local memory, and 2 field programmable gate array (FPGA) able to perform real time algorithms for data reduction and digital pulse processing.
Considering that the generator power angle prediction and response based transient instability detection modules share the same data and application programming interface, it is convenient to update the existing modules or develop new modules and add them to the test platform in order to meet the multiple test requirements.
The general data and application programming interface (API) is available by which testers or operators can add new transient instability detection modules to the platform.
