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Differentially expressed genes were determined by fold change (fc) calculation of log2 transformed expression data.
Log 2 transformed expression values were annotated with HUGO symbols.
Logarithmically transformed expression values were used to implement GSEA.
The transformed expression data, corresponding to 66 ratios, were then used for Fisher's Exact Test.
Figure 4E represents scatter plots of the natural log transformed expression values of all genes (22690) on the array.
In addition, it allows linearly transformed expression patterns to be recognized and is robust against sporadic outliers in the data.
Similar(32)
We transformed the GSE28521 data by inverting the log2-transformed expression data using the exponential function.
For clustering, log2-transformed expression data for differentially expressed genes were gene-centered (mean) and normalized.
We calculated the coefficient of variation of the log-transformed expression over the 240 data points for each expressed gene.
The log2-transformed expression data were used in the downstream analyses.
Average linkage and Pearson correlation of log-transformed expression values were employed.
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