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Of 42,677 examined genes, 2,020 (equal penalties for gene gains and losses, terminal.pen1; see [ 4, 22] for details) and 961 (higher penalties for gene gains than for losses, terminal.pen2) putative horizontal gene transfers were mapped to the terminal branches of the phylogeny.
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The transfer functions were mapped onto a grid by comparing each measured station to a reference (or base) station.
The sources of traffic used in the simulation were voice, video, Web, and file transfer, which were mapped, respectively, by the service classes: UGS, rtPS, BE, and nrtPS.
Transfer events were mapped onto the branches of the species tree with a Poisson process, as was done in Galtier (2007): each branch in the species tree received a Poisson-distributed number of events with an average proportional to the branch duration.
These groups of sequences were transferred to IPA where they were mapped to known genes and associated pathways.
The distribution of coexpressed genes with each transferred gene was mapped onto pathways.
The structure of human plasma cholesteryl ester transfer protein (CETP) was mapped in silico by a search of the structural effects of missense mutations in the CETP gene.
The number of genes classified into known metabolic pathways or systems was significantly higher for duplicated genes, while several horizontally transferred genes could not be mapped.
The breakpoint of the distal ± 13 Mb 11q25->11qter deletiof of the transferred chromosome in subclone MCH574c3 was mapped between BAC clones RP11-340L13 and RP11-697E14 (131.230 Mb – 131.230 Mb).
The footprint of collagen II on DDR2 was mapped by transferred cross-saturation experiments [38] and identified the following residues as important for collagen binding: Trp52 (L1); Arg105, Ile112 and Glu113 (L4); Met174 and Asn175 (L6); and the Cys73-Cys177 disulphide bridge at the bottom of the trench formed by loops L1 3, L4 and L6 (Fig. 2A).
For weeks, though, Mr. O'Neill and other board members had been mapping out the transfer of power during meetings that occurred, in part, while Mr. Pandit was in Japan last week attending a gathering of the International Monetary Fund and the World Bank, said the people briefed on the matter, who declined to be named because the meetings were private.
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