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Unexpectedly, high cross-species transferability was observed, suggesting that the transferable SNPs may largely represent ancestral genetic variations that have been preserved differentially among subfamilies of Pectinidae.
A similar level of microsatellite marker transferability was observed from Triticum aestivum L. to its ancestral diploid species [ 24].
Remarkably, high population transferability was observed for the developed SNP markers, and the vast majority of which were also neutral markers.
Significant local transferability was observed for four loci, but only two of the local significant SNPs were in LD with the index SNPs from Europeans.
Relatively low cross-species SSR transferability was observed except that between bottle gourd and watermelon who are both members of the subtribe Benincasinae, and, as expected, rate of marker transferability showed significant decline with increasing phylogenetic distance (Table 4).
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The least transferability rate was observed in case of section Triseminatae a basally diverged species [ 3, 4].
Of the 100 SiILP markers assayed, the highest transferability percentage (98%) was observed in proso millet and lowest (59.4%) in wheat, with an average percent transferability of ∼85% (Table 2).
Overall, an average transferability of ~92% was observed (Table 6, 7), which was higher for Coffea spp. (> 93%) than for the related Psilanthus spp. (~82%).
Overall, a transferability of ~94% was observed for the wild Manihot relatives, i.e. 80 markers amplified alleles from one or more wild species.
The lowest transferability within the Fagaceae family was observed in Fagus sylvatica, with only 14.4% of transferable markers.
The highest transferability (up to four species) was observed for marker C10745S115_CG (Table 2).
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