The activation of a paternally inherited TP therefore likely involves a posttranscriptional event that allows its transcripts—or transcripts that contain its sequence to be processed into P-element piRNAs.
These multiple transcript unigene clusters can represent transcription variants, allelic variants, closely related paralogues, misassembled transcripts, or transcripts that were fragmented due to low coverage.
The multiple contigs that were assembled into unigene clusters may represent transcription variants, allelic variants, closely related paralogous sequences, misassembled transcripts, or transcripts that were fragmented due to low coverage [ 46].
Hence, these ESTs should include fewer housekeeping transcripts, abundant transcripts, or transcripts common to both phases or to other organisms.
Yet this may include probes that match unannotated transcripts, or transcripts which are non-alignable to the current genome.
First, these are subtracted libraries, created with the objective of identifying rare, phase-specific transcripts or transcripts involved in morphogenesis, apical growth, or phase change.
