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Plant natural antisense transcripts database.
PlantNATsDB (plant natural antisense transcripts database) (Chen et al., 2012) provides the users with the genome-wide prediction results of both cis- and trans-NAT pairs of 70 plant species.
The mRNA expression profiles data shown for the specified gene mRNAs were obtained from the list of periodic transcripts database described earlier [5], and plotted using Microsoft Excel Microsoft Corp.., WA).
From Figure 2B, we can see that on average 46% (this is the under-estimated percentage, see Discussion) of junctions with p-value≤0.01 can be verified by transcripts database, while only less than 5% of junction with p-value>0.01 can be verified.
Briefly, the reads were first mapped to the P. trichocarpa transcripts database from JGI Phytozome 2.0.
Thus, the carnation transcripts database will contribute to further investigations into the diversity of anthocyanin modification mechanisms.
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Third, the distinct approaches of this study will allow an easy updating of our mouse retina transcripts databases in future.
The standalone version of the plant target prediction tool permits one to choose transcripts databases for searching targets.
The number of ESTs in a large transcript database can be used to estimate relative transcriptional rates.
First, a transcript database was created from normalized cDNA, which was mined for transcription factors.
The accuracy of our transcription starts is therefore dependent on the quality of the Ensembl transcript database.
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