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Here, we set out to build a comprehensive, high-quality, annotated N. furzeri transcript catalogue.
We also assessed the fragmentation and redundancy of the transcript catalogue.
To strengthen the annotation of the N. furzeri transcript catalogue, contigs were assigned to Gene Ontology (GO, [ 22]) categories.
As a result, the N. furzeri transcript catalogue contains transcript contigs for 19,875 protein-coding genes.
Future work will be directed towards completing the transcript catalogue, e.g. including genes expressed in early development.
We provide a comprehensive, annotated N. furzeri transcript catalogue and a first transcriptome-wide insight into N. furzeri ageing.
Similar(20)
Missing transcript data from P. trichocarpa and P. patens may be due to incomplete transcript catalogues of these plants.
They can be used to establish transcript catalogues [ 9- 11] and to provide experimental evidence when building gene models from genomic sequence, particularly for 5' and 3' untranslated sequences [ 12].
A large collection of high-quality ESTs was obtained, de novo assembled and characterised, which represents a dramatic expansion of the current transcript catalogues of P. tabuliformis and which will gradually be applied in breeding programs of P. tabuliformis.
Similarity searches of the S. torvum transcript tags catalogue produced 12,344 annotations.
These genes, along with the genes with nested transcripts, were catalogued as possibly transcribed with alternative promoters.
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CEO of Professional Science Editing for Scientists @ prosciediting.com