Sentence examples for transcript alignment from inspiring English sources

All transcripts, including ESTs and FL-cDNAs were aligned to the genome, followed by our transcript alignment validation procedure and subsequent alignment assembly.

Probe, transcript, alignment, probe set and array data were stored in a MySQL 5.0 database.

BLAST result section displays probe to transcript alignment results.

We considered only splice sites supported by matching intron coordinates of spliced transcript alignment evidence.

Earlier application of PASA utilized the BLAT [ 58] and sim4 [ 59] transcript alignment software.

These histograms exclude those variations supported by only one transcript alignment.

Although we used standard alignment options for our genomic alignments using TopHat (Trapnell et al., 2009), we observed that the TopHat alignments generally had fewer aligned reads than the transcript alignments used by our PSG methods.

Genes with the largest decrease in expression in SCZ samples were the solute carrier family 25 (ornithine transporter), member 2, 59% in transcript alignments and LOC126170, similar to peptidylprolyl isomerase A isoform 1, 73% in transcript alignments.

In addition, three post-synaptic membrane genes showed altered expression: GABRA1 (see above), ZACN (ligand-gated ion channel, zinc activated 1; down-regulated 21% in transcript alignments and 5% in genome alignments) and CACNG2 (calcium channel, voltage-dependent, gamma subunit 2; up-regulated 169% in transcript alignments and 10% in genome alignments) (Fig 10, Table 3).

First, based on the availability of sequenced genomes and large databases of sequenced transcripts (ESTs and cDNAs), alternative splicing events may be searched through reciprocal transcript alignments and alignments to genomic sequences.

Both ab-initio and transcript alignment-based methods were used to generate the gene models for X. dendrorhous.