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It has already been mentioned that traits were extracted from several CGIAR centres' databases for each crop and GCP central registry to develop the current CO.
In the present study, the trait variations for either geometrical or topological traits were extracted from previous observations of apple bi-parental progeny, which were derived from a 'Starkrimson' × 'Granny Smith' cross, with parents being chosen for their contrasting architecture.
Factor scores from the confirmatory factor analysis model (see earlier section on CU traits) were extracted and linear regression models fitted to assess their association with the predictor variables.
All protein variants annotated as associated with a PGx trait were extracted from PharmGKB (http://www.pharmgkb.org).
The full list of QTL for each of the traits analyzed was extracted from the Animal Genome QTL database [ 30] and mapped to chromosomes 1 to 29.
Likewise, individual data by trial and trait can be extracted from the global database using the specific script Subset_by_trial.R and Subset_by_trait.R, respectively.
All fluid cognitive domains were assessed using multiple tests to allow a latent trait to be extracted for each.
A list of native flowering plant species was obtained from Wilson (1982), and floral traits and breeding systems were extracted from Allan (1961), Moore and Edgar (1970), Webb et al. (1988) and Edgar and Connor (2000).
Using a non-destructive phenotyping facility, 51 image-based traits (i-traits) for 507 rice accessions were extracted.
For each trait, the fitted phenotypic values were extracted from the model with the best fit.
To minimize circularity of the analyses estimates of brain activation were extracted independent of individual differences in trait empathy.
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