Sentence examples for train alignments from inspiring English sources

The capacity expansion is realized through the location of train alignments and stations in an urban traffic context by selecting the time periods.

After the initial DTs are constructed from the training alignments, the HMM transition parameters and DT leaf values are re-estimated using several iterations of the Baum-Welch algorithm [1].

Based on his past work with high-speed rail officials in Fresno, Burbank City Manager Mark Scott said the rail authority may be unable to make an actual purchase offer until the environmental review of the bullet-train alignments and station alternatives is completed more than a year from now.

This yields a dataset of negatives, or alignments with statistical properties similar to those of the original training alignments but with no true ncRNAs present.

We fitted newly estimated HIV models and three previously published models-JTT [28], WAG [14] and rtREV [15], estimating stationary frequencies from the data to each of the training alignments.

We developed an efficient computational tool to facilitate the estimation of substitution matrices from training alignments and subsequent generation of scoring matrices at the desired level of evolutionary distance.

HyPhy scripts needed to fit a REV model to a collection of training alignments and generate similarity scoring matrices can be downloaded from http://www.hyphy.org/pubs/HIV-model/. HIV-1 models presented here are available as a part of the standard distribution of HyPhy (HIVWithin and HIVBetween models).

The training alignments and test fragments are provided in the Supplementary Material.

All sequences attending at the training alignments were excluded from the test set.

The 51 training alignments contain from 5 to 1080 sequences (median 20); each is used to create a single CM as a search query.

HMMER is a profile alignment algorithm and was trained on sensu strictu species intergenic sequences (S. cerevisiae, S. paradoxus, S. mikatae, S. kudriavzevii, S. bayanus) aligned using ClustalW and then run on each genome not included in the training alignments.