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Respiratory tract samples were obtained from 227 WYD2008 attendees who sought treatment at established clinics.
A working clinical definition was set during the pandemic to screen for all persons presenting fever, cough and headache [ 18, 19], who were considered potentially infected, and respiratory tract samples were obtained to confirm the diagnosis; for infants irritability was used instead of headache, and in the elderly population fever could be missing [ 13, 19].
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Respiratory tract tissue samples were obtained within 2 4 hours of death from a horse and a greyhound, each euthanized for reasons other than this study, and rinsed extensively to remove surface mucous.
The other set of human urine specimens was related to a study of urinary tract infections (UTI) where samples were obtained as medical waste from a urine diagnostics laboratory.
The samples were obtained from children hospitalized for a lower respiratory tract infection in a 3-year period (2000 2002).
In a study from Sweden, stool samples were obtained from household members of outpatients with urinary tract infections [ 14].
Weekly rectal swab samples were obtained on admission in order to identify digestive tract carriage of MRPA between ICU admission and discharge or the time to MRPA clinical sample detection.
Sputum and BAL samples were obtained because of strong clinical suspicion for lower respiratory tract infection, generally associated with radiologic evidence and severe illness.
Tissue samples were obtained from prepucial/clitorial glands, prostate, liver, parotid glands, submandibular glands and whole uterus tract (without ovaries).
Samples were obtained from young children, infants, adults, the elderly, and immunocompromised persons, who had mild to severe respiratory tract illnesses.
Blood samples were obtained preoperatively.
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