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In the total pedigree, 169 different male and 142 different female offspring were fathered by 85 males and mothered by 95 females.
For the real pig pedigree, we randomly sampled 1010 last-generation offspring from a total pedigree of 5390 commercial pigs and included either two or five generations of pedigree information.
The analysis using F ped was carried out using all available performance and pedigree records, which included 823 sows with reproductive records on 2712 litters and a total pedigree file with 1032 animals.
The total pedigree comprised 828 individuals, including absent or dead relatives, composed of 10 independent families that can be subdivided into 206 nuclear families (father mother couples with at least one child) with an average of 3.6 children each.
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The total pedigrees are comprised of 2,427 individuals, including absent or deceased relatives.
When considering contracting chains in the entire pedigree, the total state space dropped from 2, which is completely infeasible, to a state space of 2, a reduction of more than five orders of magnitude.
In total, 52 pedigrees were included in this analysis.
In total, these pedigrees consisted of 4728 offspring with both parents genotyped (Table 1).
In total, the short pedigree spanned three generations and contained 1,821 animals, whereas the deep pedigree comprised four generations with 2,671 animals.
Regarding the conservation strategy within the TCP, the Shek-Ki and Hua-Tung breeds showed the highest priority for conservation in terms of genetic risk status and contributions to total diversity across pedigree- and molecular-based approaches.
Implementation of multipoint oligogenic segregation and linkage analysis by use of Bayesian Markov chain Monte Carlo (MCMC) method in the presence of missing values increases the power of the study by including the information from a total three-generation pedigree dataset and by sophisticated IBD sharing probability estimations [ 17].
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