Sentence examples for tools the sequence from inspiring English sources

Using custom developed bio-informatics tools the sequence reads are clustered, aligned, and mined for mutations or single nucleotide polymorphisms (SNPs).

Furthermore, for performing a series of analyses with different software tools, the sequence data need to be reformatted to the required data structure.

Comparative-genomics-based thelsequencee the sequence of a query genome to one or more reference genomic sequences to identify elements shared by or differing between the sequences.

With a Perl program using a pattern match representing the 4,096 possibilities and NCBI BLAST standalone tool the sequences were scanned for possible HMGA2 binding sequences.

Using the same tool, the sequences in all six translation frames were subjected to the InterProScan to find conserved protein domain matches in the Integrated Protein database of the European Bioinformatics Institute [ 101].

The second tool converts the sequence of updates into image frames that are combined into a movie depicting the network evolution.

A motif search using the MEME Motif discovery tool identified the sequence of 5′-aAGGa as conserved RBS motif.

The most abundant representative sequence of each of the most abundant clusters, altogether encompassing >90% of the sequences, was translated into amino acid sequence using the ORF Finder tool of the Sequence Manipulation Suite (http://www.bioinformatics.org/sms2/).org/sms2/

GRO participated in and performed design of the DSA research tool, performed the sequence content analysis and helped to draft the manuscript.

A second control was generated by pooling all 3'UTR sequences into one large continuous sequence (226,643 bp), and then create ten separate randomized controls using the shuffle DNA tool at the sequence manipulation site.

Despite the development of powerful computational tools, the full-sequence design of proteins still remains a challenging task.