The company built upon the engine during development in features such as lighting, rendering, visibility, networking, and tools pipelines.
CRCDA is the first web portal which provides literature, tools, pipelines, pathway and SRA specific to NGS and cancer.
To perform the comparison, the workflow tool Pipeline Pilot from BIOVIA [13] was used.
Automation of the queries and processing of the results was performed with the help of the workflow tool Pipeline Pilot [22] from BIOVIA.
Because the production used an entirely Silicon Graphics and IRIX-based tool pipeline, the programmers used $100,000 Silicon Graphics workstations instead of the $3,000 personal computers that were the standard at the time.
Software tools were created by: GLF (perl comparison tool pipeline), DRD and JGR (e-genotype), FY (AtlasSNP), RAH and AM (Genboree), YR (SNPdetector).
Multi-tool pipelines are required to analyze and integrate different types of -omic data and to combine private patient data with public databases.
Galaxy features a history system that tracks user inputs and parameter settings, ensuring that analyses can be reproduced precisely, as well as a seamless workflow system that allows reusable multiple tool pipelines to be created by extracting from an existing analysis history or through using an interactive drag and drop interface.
CASP solves this problem by integrating SharePoint with other tools like Pipeline Pilot, Accelrys JDraw applet and ACD Labs to find the content related to the query.
Because of the Unicode compatibility of the integrated tools, the pipeline should work well over texts encoded in both ASCII and Unicode.
