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AG designed the study, made critical edits to tools, participated in analysis and edited this manuscript.
NAR, SB and NAL designed phylogenetic tools, participated in phylogenetic analysis and revised the manuscript.
AO designed study tools, participated in data collection, analysis and drafting of the paper.
CHK conceived of the study, isolated the bacterial strain, contributed analysis tools, participated in data analysis, and draft the manuscript.
MT participated in study design, development of data collection tools, participated in supervision of the field work and did a lot of writing of the manuscript.
MR contributed to conception and design of the study, developed data collection tools, participated in data collection, analysis and interpretation, and manuscript review.
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In addition to these tools, participating services may choose to use any of a set of additional tools that will be made available through the project.
CORDS networks regularly meet to exchange information and innovations (e.g., new data-sharing tools); participate in training courses and learn through case studies; and jointly build surveillance capacity.
In this sense, it is not exactly correct to assert that BLAST and naïve are (almost) the best performing tools because many tools participating to CAFA, whenever possible, tried to provide more informative annotations in place of the less informative "protein binding".
The REMBRANDT is composed of the REMBRANDT NER tool (participated on the Second HAREM RE-NOIRIR, a semantic query reformulation module for document retrieval; SASKIA, a knowledge base for all knowledge resources and stored data; an indexer that generates standard term and semantic indexes for all extracted NEs; and a retrieval and ranking module, called LGTE7 (Lucene with GeoTemporal Extensions).
TAM designed the study and the audit tool, participated in auditing the hospitals, analyzed the data, and wrote the manuscript.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com