In contrary to many existing tools no tuning of the tools parameters is performed for the validation.
More specifically, it can be useful for tuning software tools parameters, but also testing new algorithms for label-free quantitative analysis, or for evaluation of downstream statistical methods.
Detailed information including software tools, parameters and data sources is presented in the "Pipeline" page.
The pathways that are probably present in the genome are imported from a reference database, following the Pathway Tools parameters [ 133].
The de novo genome assembly of whole genome sequence data is a complex task and typically involves testing multiple tools, parameters and approaches to produce the best possible assembly for downstream analysis.
The research provides theoretical guidance for the tool parameter design and density determination of pulsed neutron gamma density logging technique.
To address these limitations, we created Sweepster, a tool parameter space exploration application.
Consider the example given in the introduction, where a workflow is retrieved and run on a set of input datasets, setting a tool parameter at run time.
While Trackster is useful for running an analysis tool to obtain data for particular parameter settings, it is not possible to see the tool parameter space or perform parameter sweeps.
For example, in tool parameter space exploration, it's useful to be able to run a tool with many different settings and use visually compare tool outputs for different settings.
