Sentence examples for tools ingenuity from inspiring English sources

Two functional pathway analysis tools, Ingenuity Pathway Analysis (IPA) and Pathway Studio 7.0, were used to obtain curated molecular interactions related to the 12 genes.

Knowledge-based gene networks were generated by using Ingenuity Pathway Analysis (IPA) tools (Ingenuity Systems; Redwood City, CA, USA).

Moreover, the bioinformatics studies, such as gene ontology and gene network analysis, using knowledge based bioinformatics tools (Ingenuity Pathway Analysis and DAVID) revealed biological functionalities and intermolecular connections among interacting genes associated with differentially expressed genes.

To find a connection between the differentially expressed genes bioinformatic tools (Ingenuity Pathway Analysis; Ingenuity systems Inc., CA, USA, and PathwayAssist; Stratagene, CA, USA) and literature studies were used to assign pathways for these genes.

The third level was to construct gene networks of the proposed GCs regulated genes from three selected web-based tools: Ingenuity Pathway Analysis (IPA), Search Tool for The Retrieval of Interacting Genes (STRING), and Gene Multiple Association Network Integration Algorithm (GeneMANIA).

Pathway analysis was carried out using the web-based bioinformatics tool, Ingenuity pathway analysis (IPA, http://www.ingenuity.com).com

Subsequent annotation and analyses were carried out with the web-based pathways analysis tool Ingenuity Pathway Analysis (IPA) v7.0 (Ingenuity Systems Inc., USA, http://www.ingenuity.com/).com/

Functional annotation of genes targeted by integration clusters were performed by the Ingenuity Pathways Analysis (IPA) tool (Ingenuity Systems, www.ingenuity.com).com

Initial pathway analysis of the list of 106 upregulated proteins using the computational gene network prediction tool, Ingenuity Pathways Analysis, categorized the proteins into biological functions.

We used the web-based bioinformatics tool, Ingenuity pathway analysis (IPA, http://www.ingenuity.com), which is based on >1.7 Million published articles, to discover networks regulated in the skeletal muscle of ICU patients, compared with age matched controls.

Among the eight porcine miRNA that were found differentially expressed, seven (all but miR-192, for which no interacting molecule in Ingenuity Pathway Knowledge Base was found) were eligible for network analysis with the Ingenuity Pathway Analysis tool (Ingenuity® Systems, www.ingenuity.com).com