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A comprehensive MATLAB toolbox implementing the method is freely available; a python implementation providing the basic capabilities is also available.
Independent component analysis (ICA) was carried out using MELODIC toolbox implementing probabilistic independent component analysis (PICA) [20].
We currently work on extending NaviCell with an analytical toolbox implementing a set of methods for visualizing high-throughput data (expression measurements, protein activities, mutation profiles, etc).
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The MRI stacks were processed with a custom toolbox, implemented using open source software.
The toolbox, implemented in Matlab™, is provided with a user-friendly graphical interface facilitating comparison of the algorithms.
Global white matter volumes had already been extracted using the Easyvolume toolbox implemented in SPM8.
The 3D T1 images were used for GM analysis using VBM8 toolbox implemented in SPM8 (Wellcome Department of Imaging Neuroscience, University College London, London, UK).
Results: The ultrafast protein classification (UProC) toolbox implements a novel algorithm ('Mosaic Matching') for large-scale sequence analysis.
The period and rhythmicity analysis was performed with a signal-processing toolbox implemented in MATLAB (MathWorks, Natick, MA) as described by Stoleru et al. (2004).
We parcellated BA10 using previously described methods (Beckmann et al. 2009; Johansen-Berg et al. 2004; Mars et al. 2011, 2012) in the "ccops" toolbox implemented in FSL.
We masked the contrast observed touch no-touch witouch no-touchea 3b mask provided by the Anatomy toolbox implemented in SPM.
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