Exact(54)
Sequence reads were aligned to the Human Reference Genome (assembly hg19) using Burrows-Wheeler Alignment (BWA) Tool version 0.6.1.
Next, we examined the read distribution by genomic features, i.e., exonic, intron, transcription start site32 and transcription end site12 for each sample using RSeQC tool version 2.3.646.
We used two well-established tools – the inchi tool (version 1.04) and the molconvert tool (version 5.12.0).
Initially, mutants were generated, through μJava tool (version 4), from the systems shown in Table 1.
All obtained nucleotide sequences were checked for chimeric artefacts with the Mallard software tool (version 1.02) [28].
To measure the achieved throughput of each wireless station, the Iperf measurement tool version 1.7.0 is used.
Similar(6)
Reads were then mapped to the 64 bp reference sequences using the Bowtie mapping tool (version 0.12.7, [ 24]).
Preprocessing of the fMRI data was carried out using FEAT FMRI Expert Analysis Tooll) Version 6.00, part of FSL (FMRIB's Software Library, www.fmrib.ox.ac.uk/fsl).ac.uk/fsl
After that, FindBugs Tool (version 3.0.0) was used with option -low so that warnings of any priority could be reported.
For the kinetic modeling and batch analyses, a combination of PMOD Kinetic Modeling Tool version 3.6 (PMOD Technologies Ltd). and in-house developed software was used.
The transmission electron microscopy (TEM) observation was carried out using TEM, Philips CM-12, and the particle size distribution was measured using UTHSCSA Image Tool version 3.0.
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