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Fig. 6 a client/server architecture, b Session reconstruction tool (input and output).
In addition, generic use, i.e. not only phylogenetic related, may apply, an issue that depends on the content of the data incorporated by a user in the acceptable per tool input file formats and tree management possibilities.
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When simulated reads are mapped back to the reference sequence and possibly processed by an independent post-processing tool (remapping around indels, etc)., an evaluation tool inputs the final alignments of all reads, extracts information about their origin and assesses if every single read has been aligned to a correct location (and possibly with correct edit operations).
Developers can describe a data analysis pipeline in YAML or JSON files that contain a clear description of tools, input parameters, input and output data, and how the tools are connected.
The study assesses the performance of different model checking tools, and strategies for converting activity diagrams into the tools input notation, for a class of real time activity diagrams used in medical device design.
Researchers developed a modified tool using input from emergency physicians who used the existing framework provided by CanMEDS and previously established tools.
SVM as a discriminative tool maps input cepstral feature vector into high-dimensional space and then separates classes with maximum margin hyperplane.
In the tool, the input data is directly accessed from a semantic database [21] that provides the TCGA raw data in data structures designed to support the graphic representations reported here.
The tool accepts input sequences in fasta format and plain text delimited format.
The tool needs input data regarding the patient in order to operate.
This tool took input of the mutated protein models derived from PHYRE-2 server in .pdb format.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com