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Velvet is one of the first de Bruijn graph-based assemblers for short reads that is often used as a standard tool for assembling small- to medium-sized genomes.
Microsoft's move puts it at odds with a generally held view in Silicon Valley that stock options are an essential tool for assembling highly motivated teams of technology experts who are willing to work long hours over months or years, gambling that in the end the stock market value of their options will justify their efforts.
Hence, by developing a computational tool for assembling ideas, the underlying rules of design decision-making might be revealed.
BAC-FISH technology may also prove a useful tool for assembling short whole genome shotgun sequence fragments obtained by high throughput parallel sequencing methods from complex, repetitive genomes like those of Lepidoptera [7], [56].
This paper expands on Hapler [ 12], a tool for assembling reliable haplotypes given a preliminary alignment of genetically diverse reads.
CLIIQ [ 9] is another recent tool for assembling isoforms from multiple sample RNA-Seq data based on integer programming.
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Though there are some comparisons among these de novo assembly tools for assembling transcriptomes of different eukaryotic organisms, there is no report about the relationship between assembly strategies and ploidies of the organisms.
Imagine looking at the world with 20-20 vision but without the conceptual tools for assembling that information into a functional model.
At first, he said, it was hard for the villagers to believe that the American technicians would return after the installation of the windmills, turbines and other equipment -- all of it imported, together with tools for assembling.
The tools for assembling average soma dendrite networks and estimating synaptic connectivity have been described in detail previously (Lang et al. 2011).
Such an objective will require application of high throughput sequencing technologies allied to advanced bioinformatic tools for assembling sequence data from very closely related genes.
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