Sentence examples for tool for alignment from inspiring English sources

The motifs were then checked against the entire 13 CGIs by using the MAST tool for alignment.

In addition to developing a database of repetitive sequences, we have developed a graphical tool for alignment of any sequence to the raw read data, to allow the detection of repetitive regions.

Hane, J. K. & Oliver, R. P. RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences.

Because univariate scores are sometimes too simplistic we also developed a visualization tool for alignments for candidate SVs.

We designed GenomeRing to be a fast, interactive overview tool for alignments of several (ideally less than 10) genomes with high similarity (less than 25 genomic events for optimal visual clarity).

kbp (kilobase pairs); LCR (low copy repeat); Mbp (million base pairs); Ma (million years ago); ORF (open reading frame); SULT (sulfotransferase); TREx (transition redundant exchange); VISTA (visualization tool for alignments).

This has significantly improved the interoperability of next-generation tools for alignment, visualization and variant calling.

Tools for alignment and cross-mapping of taxonomies can only be partially automated, since the domain knowledge held by taxonomists is very difficult fully to codify.

At this time, graphical displays of the TMAP alignment could only be visualized with separate tools for alignment and assembly viewing, such as the IGV package (Integrative Genomics Viewer [23]) which accepts BAM (binary alignment map), BAI (binary alignment index files) and other file formats.

HISAT25 (Hierarchical Indexing for Spliced Alignment of Transcripts) is a highly efficient alignment tool for aligning short reads from RNA sequencing experiments onto reference genome.

C-Sibelia incorporates LAGAN, a global alignment tool, for aligning different instances of the same synteny block.