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We took divergence dates from a recent review of the fossil evidence [25], taking the average of the maximum and minimum dates.
We took divergence dates for the major groups Elasmobranchii, Actinopterygii and Amphibia from the TimeTree database (Hedges et al. 2006).
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Use of PSI-BLAST and/or substitution matrices that take divergence into account, such as implemented in the OMA project using PAM matrices, could help eliminate these effects.
This is well known, and an old criticism of the orthology concept is that it does not take divergence into account.
The method is easily adapted to take divergence time information into account, e.g. from fossil data [ 34, 35], by restricting a speciation to a specific interval or using a prior distribution on the interval.
He said activists dissect statements and take any divergence as a sign that something is amiss.
Taking the divergence of Eq. (32), the equality ∇·∇×A np =∇·B np =0 is automatically satisfied.
The higher order Laplacian is derived by taking the divergence of a particle-based gradient model (Monaghan, 1992) [18].
Since (nablacdot u=0), it yields by taking the divergence to (4.2 1 begin{aligned} Delta p=-nablacdot ucdotnabla u)+nabla^{2}:bigl( mathbb{S}+sigma^{nd}bigr). end{aligned} (4.28).
After taking the divergence of this equation, the left-hand side vanishes, and thus, we have (boldsymbol{B} cdot mathbf{nabla}) alpha = 0, (14).
The 3D higher order Laplacian model is derived by taking the divergence of a particle-based gradient model [2] and is then applied for discretization of Laplacian of pressure corresponding to the Poisson Pressure Equation (PPE).
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