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For this purpose, it was necessary to develop a graphical language (meaningful to humans), a computer-readable language (onto which the graphical language can be mapped) and software that would allow charting a large map of molecular interactions and, simultaneously, creating a computer-readable file (serving as a database).
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In particular, we hope to develop a simple language for querying the predicted phenotypic values, optimize WholeCellSimDB's disk usage and retrieval performance, and integrate WholeCellSimDB with graphical analysis tools such as WholeCellViz to enable more researchers to interact with whole-cell simulations.
"We're not going to develop a common language.
A primary goal of natural language processing researchers is to develop a knowledge-based natural language processing (NLP) system that is portable across domains.
At the same time, they had to find a graphical language that was a delicate balance of the abstract and the concrete.
As with any language, it will take some time to develop an "ear" for the language.
This chapter deals with UML, which is a graphical language available to describe systems by expressing their constructs and relationships.
The Unified Modeling Language (UML) is a graphical language for communicating design specifications for software.
For the representation of pathway entities, Beacon implements a graphical language known as the Activity Flow (AF) language, which is part of a set of standardized graphical languages defined in the Systems Biology Graphical Notation project [ 96].
None of the existing anatomical diagrams described in the literature rely on a graphical language.
The first step, presented here, is the design of a graphical language, called VCM.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com