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The collaboration is now analyzing additional data.
We analyzed nine additional data sets extracted from the literature using Method 3. We fit equation 3 to these data using ordinary least squares regression in the surface fitting tool in Matlab©.
Sheehan (2006) also analyzed 31 additional data sets.
Henceforth, we refer to this data set as Data Set 1. Next, to ensure that our results are applicable to a wide range of proteins, we analyze an additional data set of 1,272 RIGs corresponding to a non-redundant data set of 1,272 proteins, pre-compiled by the PISCES server [31].
If needed, researchers will be able to upload additional data sets to the secure platform.
In addition, we separately analyzed an additional data set of gene expression biomarkers from 119 samples taken in a Duke University study [ 2] of advanced ovarian cancers.
In order to see if the "RPKM of the background transcription" is dependent on the sequencing technology used (Illumina or SOLiD), we analyzed an additional data set from EHEC prepared according to the Illumina technology (data not shown).
Clark, N. R. & Ma'ayan, A. Introduction to statistical methods to analyze large data sets: Principal components analysis.
They also have access to substantial computational resources needed to analyze massive data sets.
We applied GISTIC [34] to analyze the data set.
We used two ways to analyze our data set: 1).
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