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TREE-PUZZLE 5.2 incorporates the JTT matrix for amino acid substitutions and gamma-distributed rates to allow for rate heterogeneity among sites.
In addition, the proportion of invariable sites and a gamma distribution parameter to allow for rate heterogeneity among sites (six categories) and uniform prior probabilities and tree topologies were implemented in the analyses.
Our analysis used the Bayesian skyline model of population growth as a flexible demographic prior and the relaxed lognormal molecular clock to allow for rate variation among branches of the tree.
For example, with LpoB/TolA the reaction is too fast at the standard conditions to resolve the initial reaction rate; therefore, in this experiment the PBP1B concentration and temperature were lower to allow for rate determination.
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Recombination rate was log-transformed to base 10, after adding a constant of 1 in order to allow for zero rate values.
The terms ensure homes, businesses, schools, and any nonprofit organizations using rooftop solar panels will be provided "one-to-one" retail credit (or full retail value) from the state's utilities for each kilowatt hour generated back to the electric grid--making South Carolina the 44th state (subscription) to allow for full rate credit.
Previous work by the authors considered the rate of growth of the coke to be infinite, but the present paper generalizes the theory to allow for finite rates.
Slaves often could not consume enough calories to allow for normal rates of reproduction; what children they did have might easily starve.
Most gyms have wiggle room in their pricing structure to allow for individualized rates.
And what do you think would happen if we changed our constitution to allow for multiple rates and we once again had one-party rule in Springfield?
Analyses were repeated using Cox models, to allow for changing rates by age, and using robust standard errors to allow for non-independence of data from children with the same mother.
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