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For GNPmax and CNTmax, alignment time is almost equal, and equal time of alignment is for GNPaver and CNTmin.
There has been a clear correlation between the aspect ratio of the particles and the time of alignment by the electric field.
"It's very unusual to get this time of alignment," Tran said.
Perl and bash scripts (available upon request) were written in order to capture peak memory usage and execution time of alignments.
Further analysis of other species (Supplementary Material) indicates that the run times of the alignment algorithms are extremely sensitive to the number of orthologs between two species.
However, there exist two problems in the new method, one of which is how to use the saved data, and the other is how to ensure the real-time property of alignment result.
Simulations for 10% cyclic uniaxial stretch at 0.01, 0.1 and 1 Hz illustrate that the model describes the SF distributions (Figure 1) and the time courses of alignment (Figure 2) for the experimental data reasonably well, although the model predicted that alignment occurs more quickly at 1 Hz than we observed experimentally.
We have shown that FastTree 2 computes accurate topologies in a reasonable amount of time for alignments with up to hundreds of thousands of sequences.
After 20 times of structural alignments, the ligands in templates will be mapped to the query (e).
After 20 times of structural alignments, all the ligands in templates will be mapped to the query.
The default maximum number of mismatches per read was three for 100-bp reads to balance between the alignment stringency and the computing time of read alignment.
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